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Human genome sequencing and analysis

In this course, we will introduce the latest updates and end-to-end workflows for sequencing the Human genome using the Kit V14 chemistry and performing analysis using the wf-human-variation workflow. This course will introduce and discuss kit V14 library preparation options, sequencing set up and analysis through the EPI2ME platform for the detection of SNPs, indels, SVs and methylation.

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Course overview

Human Genomics Planning

1 Introduction to Sequencing Human DNA with Nanopore
2 Introduction to sequencing devices
3 P2 Solo: First-time setup and hardware check
4 Library preparation: Extraction methods and sample handling
5 Library preparation: Quality control of input DNA or RNA
6 Improving sequencing yield

Human Genomics Preparation

7 Library preparation: Ligation sequencing kit
8 Kit V14 introduction and overview
9 Kit V14 performance
10 MinKNOW: The graphical user interface (GUI)
11 Flow cell handling

Human Genomics Sequencing

12 A practical demonstration of priming and loading a flow cell
13 MinKNOW: Setting up a new experiment
14 MinKNOW Configuration for Kit 14
15 Methylation Detection On MinKNOW
16 MinKNOW: Live basecalling and output folder structure
17 MinKNOW: Assessing your run

Human Genomics Analysis

18 Methylation Detection: Sample to Answer Workflow Overview
19 Data Analysis: EPI2ME Labs introduction
20 EPI2ME Labs: wf-human-variation Platform Demo
21 Introduction to EPI2ME Labs workflows
22 EPI2ME Labs Nextflow Workflows demonstration
23 Introduction to SNP and indel detection
24 Introduction to structural variation detection

Data Analysis: EPI2ME Labs introduction

5 min
Learning objectives
  • Understand the requirements for installing the EPI2ME Labs platform
  • Learn about what the EPI2ME Labs analysis platform is and provides
  • Learn about the analysis workflows that are provided through the EPI2ME Labs platform
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