- How to estimate required coverage depth for metagenomic assembly
- Pre-and post-assembly binning
- Dereplication of assemblies
- Example tools that can be used
- MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs
- dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- Megalodon
- Tombo