Start your run
The "Kit 12" (Q20+) chemistry runs at 32°C on MinION; this is several degrees cooler than other chemistries. To avoid the flow cell overheating, make sure that the ambient temperature of the laboratory does not exceed 23°C.
Your MinION Mk1B and flow cell should still be connected. Check your MinION Mk1B is plugged in to your computer's USB 3.0 port, and the flow cell is clipped firmly into the MinION Mk1B device.
Check the MinKNOW software is still open. If you have closed it, double-click the icon on the desktop and login.
Navigate to the Start homepage and select Start Sequencing. From here, select the running parameters for your experiment from the individual tabs.
On the New experiment popup screen, select the running parameters for your experiment from the individual tabs.
Select positions
The postions tab will show the chosen flow cell. An experiment name and sample ID can then be assigned.
The other tabs will not become available until an experiment name has been provided.
Kit selection
The kit selection tab will provide a dropdown of available kits. Select SQK-RAD114.
A pop-up will appear prompting you to choose the sequencing speed. Select the Default (400 bps) option.
Click Skip to final review.
On the final page, there will be a summary of all the options chosen for the experiment.
Click Start.
When sequencing is initiated, the software will move to the System Overview. The flow cell will cycle through all 2048 channels to select the best set of 512 to start the run.
There may be a slight delay while the MinION Mk1B reaches its optimal sequencing temperature, as shown in the progress bar at the top of the GUI.
Please see this FAQ for more information.
Once the best combination of channels is selected, sequencing will begin on those channels automatically.
You will be indicated sequencing has started when flow cell health is displayed and a progress bar will appear beneath the flow cell.
Your basecalled reads will be written out into the folder you specified when you installed MinKNOW. By default, this will be C:\data.
Your sequencing run is now under way.