-
References
Deshpande, A.S., Ulahannan, N., Pendleton, M. et al. (2022) Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing. Nat Biotechnol. doi: 10.1038/s41587-022-01289-z
Belaghzal, H., Dekker, J. and Gibcus, J. H. (2017) Hi-C 2.0: an optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation. Methods, 123, pp. 56–65. doi: 10.1016/j.ymeth.2017.04.004.HI-C.
Belton, J.-M. et al. (2012) Hi-C: a comprehensive technique to capture the conformation of genomes. Methods, 58(3), pp. 1–16. doi: 10.1016/j.ymeth.2012.05.001.Hi-C
Comet, I. et al. (2011) A chromatin insulator driving three-dimensional Polycomb response element (PRE) contacts and Polycomb association with the chromatin fiber. Proceedings of the National Academy of Sciences, 108(6), pp. 2294–2299. doi: 10.1073/pnas.1002059108
Gavrilov, A. A., Golov, A. K. and Razin, S. V. (2013) Actual Ligation Frequencies in the Chromosome Conformation Capture Procedure. PLoS ONE, 8(3), pp. 1–6. doi: 10.1371/journal.pone.0060403
Kadota, M. et al. (2019) Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding? bioRxiv, p. 659623. doi: 10.1101/659623.
Lieberman-Aiden, E. et al. (2009) Comprehensive mapping of long range interactions reveals folding principles of the human genome. Science, 326, pp. 289–293.
Nagano, T. et al. (2015) Comparison of Hi-C results using in-solution versus in-nucleus ligation. Genome Biology, 16(1), pp. 1–13. doi: 10.1186/s13059-015-0753-7
Sati, S. and Cavalli, G. (2017) Chromosome conformation capture technologies and their impact in understanding genome function. Chromosoma, 126(1), pp. 33–44. doi: 10.1007/s00412-016-0593-6
Ulahannan, N et al. (2019) Nanopore sequencing of DNA concatemers reveals higher-order features of chromatin structure. bioRxiv, p. 833590. doi: 10.1101/833590