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Introduction to data analysis

This short course brings together introductory videos of Oxford Nanopore's bioinformatics solutions and workflows available for data analysis, including representative demonstrations of the EPI2ME and EPI2ME Labs platforms

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Course overview

Data analysis platforms

1 Introduction to data generation and sequencing output for analysis
2 Introduction to data analysis solutions
3 EPI2ME Introduction
4 Technical demonstration of metagenomic classification through EPI2ME
5 EPI2ME Labs: wf-human-variation Platform Demo
6 Introduction to EPI2ME Labs workflows
7 EPI2ME Labs Workflows set up and configuration

Starting data analysis

8 Bioinformatics file formats: reference and annotation files
9 Introduction to read quality assessment and filtering
10 Introduction to read alignment/mapping

Technical demonstration of metagenomic classification through EPI2ME

17 min
Learning objectives
  • How the EPI2ME Desktop Agent works
  • The What’s in my Pot (WIMP) shotgun metagenomic classification workflow
  • How to set up a WIMP analysis workflow
  • How to access and interpret the results
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