Products

Discover nanopore sequencing

What can it do? How does it work? Our platform performance and accuracy

Explore products

Prepare Sequence Analyse
Applications

Focus areas

From portable to high-throughput benchtop devices, real-time nanopore sensing is a new generation of technology uncovering new biology across multiple sectors.

Research

Microbial genomics Plant Human genomics Animal Cancer research Microbiome Infectious disease Population genomics Clinical research Environmental research & conservation

Techniques

Whole-genome sequencing Epigenetics Transcriptomics SNVs and phasing Multiomics Assembly Metagenomics Fusion transcripts Targeted sequencing Gene expression Single cell & spatial transcriptomics Splice variation Structural variation Chromatin conformation

Focus areas

Biopharma Education Clinical
Store Resources

Documentation

Find all the documentation needed for your nanopore experiments, including protocols and device manuals.

View all documentation

Nanopore Learning

Explore our online courses and video lessons to support your nanopore sequencing journey.

View Nanopore Learning

Resources

Documentation Publications Case studies Videos Posters Brochures White papers Workflows Getting started guides Application notes View all resources
Support About

Company

About us Board members Executive team Investor centre Company history Sustainability Careers Media resources

News & Events

News Events Blogs

Global partners

Channel partners Sequencing service providers Compatible products For partners
Oxford Nanopore Technologies Fully scalable, real-time DNA/RNA sequencing technology Oxford Nanopore Diagnostics

London Calling 2025

Submit an abstract
Dashboard Getting started Posts Groups
Nanopore Learning Documentation Highlights Updates Profile
Back
Nanopore Learning / Courses /
Metagenomics

This course brings together new and existing content to help you plan and perform metagenomics experiments using nanopore sequencing and analysis solutions.

0 % Complete
Course overview

Metagenomics Planning

1 Introduction to metagenomics
2 Library preparation: Extraction methods and sample handling
3 Library preparation: Quality control of input DNA or RNA
4 Library preparation: Improving sequencing yields

Metagenomics Preparation

5 Library Preparation: An introduction and overview of the options available
6 Library Preparation: Comparing PCR-free kits
7 Library preparation: Low input PCR kits
8 Library preparation: 16S barcoding kits
9 Library preparation: Barcoding kits and workflows

Metagenomics Sequencing

10 A practical demonstration of priming and loading a flow cell
11 A practical demonstration of priming and loading a Flongle flow cell
12 MinKNOW: The graphical user interface (GUI)
13 MinKNOW: Setting up a new experiment
14 MinKNOW: Assessing your run

Metagenomics Analysis

15 Introduction to metagenomics classification concepts
16 Introduction to metagenomic classification solutions
17 Technical demonstration of metagenomic classification through EPI2ME
18 Introduction to metagenomic assembly
19 Quality control of metagenomic assemblies
20 Additional concepts in metagenomic assembly

Introduction to metagenomic assembly

10 min
Learning objectives
  • Learn what is metagenomics assembly used for
  • The benefits of assembly with long-reads
  • Learn of the two approaches to assembly; reference and de novo
  • Learn of tools that can be used to assemble metagenomes
Related content

The links below are outside this course and will open in a new tab.

Lesson library
Links

What are the benefits of community membership?

Posts

Interact with thousands of other nanopore sequencers from around the globe.

Private Channels

Private channels are available to discuss specific topics and technology applications.

Product and technology updates

Stay up to date with the latest Oxford Nanopore products and technology.

Software

Download latest versions of sequencing and analysis software.

 Login
@2008 - 2024 Oxford Nanopore Technologies. All rights reserved

Cookies Notice

We use cookies and similar technologies on our websites to help provide you with the best possible online experience.

By using our sites and apps, you agree that we may store and access cookies and similar technologies on your device.