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5. Sequencing run
  • Introduction
  • 1. Software installation
  • 2. Hardware check
  • 3. Flow cell check
  • 4. Library preparation
  • 5. Sequencing run
  • 6. Results and metrics
  • 7. Next steps
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5.3

Prime your flow cell

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Important

Pipetting tips

The following section will load fluid and sample into the flow cell. In the images below are some simple tips on pipetting technique which are essential to avoid introducing air bubbles and damaging the sensor array.

When drawing up solution:

  • make sure there is no air plug at the bottom of the tip

When ejecting the solution:

  • do not fully expel the liquid from the tip
  • leave a small volume in the tip end so that no air can follow the solution into the inlet port

pipette-tips3

Open the priming port by sliding the cover clockwise so that the port is visible.

open-priming-port

Important
  • When carrying out the next step, do not remove a large volume of the storage buffer - the sensor array must stay covered
  • Make sure there is continuous buffer from the sensor array to the priming port, with no air bubbles

Remove inlet channel air plug

  • Set a P1000 pipette to 500 µl; insert the tip into the priming port
  • Keeping the tip inserted in the port, twist the wheel of the pipette until you reach 520-530 µl, or until you see a small amount of the yellow buffer in the tip. This removes any air plug that has developed in the port during shipping and storage, and a tiny volume of buffer to wet the port
  • Remove the pipette tip from the priming port, and throw away the tip

remove-air

Prime your flow cell

  • Using a P1000 pipette, slowly load 800 µl of the Priming Mix (FCF tube) into the priming port
  • Do NOT eject to the last stop of the pipette, as this would introduce air bubbles
  • Close the priming port
  • Wait 5 minutes

GS Flow Cell Prime 5

Prev 5.4 Prepare your Pre-Sequencing Mix

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