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The sequencing scripts for running Kit 12 chemistry are included in the latest release of the MinKNOW software.
Please make sure you are using the latest version of MinKNOW. Software downloads for each device type are available on the Community Software Downloads page. Set the sequencing parameters as described in the MinKNOW protocol under "Starting a sequencing run", and choose Kit 12 kits (e.g. SQK-LSK112) under Kit selection.